- Basic information
- CohesinDB ID: CDBP00417050
- Locus: chr21-32641807-32642758
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Data sourse: ENCSR000BLD, ENCSR167MTG, ENCSR230ZWH, GSE72082, GSE138405, GSE129526, GSE25021, ENCSR000BLY, ENCSR000BLS, GSE105028, ENCSR000ECE, ENCSR054FKH, ENCSR000EHX, GSE106870, GSE97394, ENCSR917QNE
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, Hep-G2, HUES64, SK-N-SH, CVI-hiPSC, Liver, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 49%,
"4_Tx": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, NKX2-2, CEBPA, POU5F1, SOX13, SOX2, ZSCAN16, HNF1A, XBP1, FOXA1, HLF, ERG, YY1, RELA, ZNF384, THAP1, RAD21, GRHL3, RXRA, GATA3, GABPA, SUPT5H, GATA1, MITF, MED1, NR3C1, CEBPG, CEBPB, STAT5B, TERF1, SCRT2, STAG1, ESR1, OCA2, CTCF, USF1, SP1, HNF4A, PAX8, BRD4, BCOR, NFIL3, SMC3, GATAD2A, PDX1
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 180
- Number of somatic mutations (non-coding): 30
- Related genes and loops