- Basic information
- CohesinDB ID: CDBP00417052
- Locus: chr21-32649686-32650031
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 65%,
"4_Tx": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): PAXBP1,SYNJ1,TMEM50B,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159086,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:29050000-29075000~~chr21:32625000-32650000,
chr21:32625000-32650000~~chr21:32725000-32750000,
chr21:32625000-32650000~~chr21:32800000-32825000,
chr21:32625000-32650000~~chr21:32850000-32875000,
chr21:32625000-32650000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:32750000-32775000,
chr21:32650000-32675000~~chr21:32800000-32825000,
chr21:32650000-32675000~~chr21:32825000-32850000,
chr21:32650000-32675000~~chr21:32875000-32900000,
chr21:32650000-32675000~~chr21:32925000-32950000,
chr21:32650000-32675000~~chr21:32950000-32975000,
chr21:32650000-32675000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:33175000-33200000,
chr21:32650000-32675000~~chr21:33425000-33450000,
chr21:32650000-32675000~~chr21:33450000-33475000,
chr21:32652383-32654378~~chr21:32825782-32827815,
chr21:32652386-32654426~~chr21:32726210-32729172,
chr21:32652386-32654426~~chr21:32825831-32827860,
chr21:32652386-32654426~~chr21:33196166-33197911,
chr21:32652389-32654469~~chr21:32825808-32827779,
chr21:32652409-32654456~~chr21:32825866-32827872,
chr21:32652429-32654433~~chr21:32825838-32827744,
chr21:32652434-32654776~~chr21:32825826-32827775,
chr21:32652483-32654348~~chr21:32825846-32827753,
chr21:32652489-32654409~~chr21:32825799-32827554,
chr21:32652499-32654463~~chr21:32825893-32827718,
chr21:32652499-32654463~~chr21:33196237-33197895,
chr21:32652522-32654350~~chr21:32825860-32827784,
chr21:32652542-32654360~~chr21:32825800-32827808,
chr21:32652542-32654360~~chr21:33196187-33197905,
chr21:32652578-32654325~~chr21:32825867-32827535,
chr21:32652587-32654469~~chr21:32825810-32827769,
chr21:32652605-32654451~~chr21:32825841-32827928,
chr21:32652616-32654320~~chr21:32825846-32827910,
chr21:32652635-32654427~~chr21:32825998-32827550,
chr21:32652673-32654332~~chr21:32825859-32827579,
chr21:32652681-32654365~~chr21:32825879-32827591,
chr21:32652689-32654365~~chr21:32825802-32827847,
chr21:32652693-32654360~~chr21:32825812-32827756,
chr21:32652694-32654377~~chr21:32825818-32827923,
chr21:32652697-32654249~~chr21:32825837-32827613,
chr21:32652727-32654348~~chr21:32825866-32827565,
chr21:32652742-32654378~~chr21:32825904-32827533,
chr21:32652754-32654437~~chr21:32825782-32827847,
chr21:32652755-32654212~~chr21:32826064-32827444,
chr21:32652755-32654315~~chr21:32727492-32729158,
chr21:32652769-32654256~~chr21:32826020-32827524,
chr21:32652778-32654242~~chr21:32826025-32827540,
chr21:32652779-32654447~~chr21:33360228-33362109,
chr21:32652835-32654360~~chr21:32825859-32827506,
chr21:32652869-32654298~~chr21:32825892-32827470,
chr21:32652869-32654298~~chr21:33444420-33446284,