- Basic information
- CohesinDB ID: CDBP00417058
- Locus: chr21-32661750-32662259
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Data sourse: ENCSR000BLD, ENCSR000EFJ, ENCSR000EAC, GSE67783, GSE72082, ENCSR000BLY, ENCSR000BLS, ENCSR000ECE, ENCSR000BMY, ENCSR153HNT, GSE25021
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Cell type: MCF-7, H1-hESC, Hep-G2, GM12878, IMR-90, SK-N-SH, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 49%,
"4_Tx": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TMEM50B,PAXBP1,SYNJ1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159086,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:32750000-32775000,
chr21:32650000-32675000~~chr21:32800000-32825000,
chr21:32650000-32675000~~chr21:32825000-32850000,
chr21:32650000-32675000~~chr21:32875000-32900000,
chr21:32650000-32675000~~chr21:32925000-32950000,
chr21:32650000-32675000~~chr21:32950000-32975000,
chr21:32650000-32675000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:33175000-33200000,
chr21:32650000-32675000~~chr21:33425000-33450000,
chr21:32650000-32675000~~chr21:33450000-33475000,
chr21:32660370-32661816~~chr21:32825818-32827923,