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Basic information

CohesinDB ID: CDBP00417060

Locus: chr21-32679338-32679541

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 75%, "15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TOP2A, SOX2, XBP1, GTF2B, ZBTB48, FOXA1, HOXB13, TBP, ERG, RELA, MYC, SOX11, PAX5, SUPT5H, ZNF143, NFE2, TEAD1, ZNF334, PHOX2B, CTCF, NUP98-HOXA9, MAFK, BRD4, SMC3

Target gene symbol (double-evidenced CRMs): IFNGR2,SYNJ1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 5

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159082, ENSG00000159128,

eachgene

Deatailed information for cohesin site CDBP00417060