- Basic information
- CohesinDB ID: CDBP00417064
- Locus: chr21-32689285-32689714
-
Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
-
Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 75%,
"15_Quies": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, GLIS1, CEBPB, MYC, TEAD1, TOP2A, OSR2, ISL1, ZNF777, GRHL3, ZFX, ZBTB48, ZBTB44, OTX2, TEAD4, ESR1, ERG3, PHOX2B, PRDM10, HAND2
- Target gene symbol (double-evidenced CRMs): SYNJ1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159128,
- Related loop:
chr21:32675000-32700000~~chr21:32825000-32850000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32675000-32700000~~chr21:32950000-32975000,
chr21:32675000-32700000~~chr21:33150000-33175000,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32686727-32688995~~chr21:32825782-32827815,
chr21:32686771-32689009~~chr21:32825818-32827923,
chr21:32687246-32688984~~chr21:32726251-32729172,
chr21:32687246-32688984~~chr21:32825812-32827756,
chr21:32687269-32688980~~chr21:32825841-32827928,
chr21:32687309-32688956~~chr21:32825826-32827775,
chr21:32687321-32688946~~chr21:32825808-32827779,
chr21:32687460-32688668~~chr21:32726790-32728912,
chr21:32687493-32688873~~chr21:32770782-32773207,
chr21:32687503-32689164~~chr21:32825859-32827579,
chr21:32687504-32688956~~chr21:32825998-32827550,
chr21:32687515-32688913~~chr21:32825840-32827525,