- Basic information
- CohesinDB ID: CDBP00417067
- Locus: chr21-32695762-32696188
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 78%,
"15_Quies": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF394, ZNF426, ZNF496, ZNF697, TOP2A, DUX4, ZNF433, ZNF101, ZNF134, ZNF654, ZNF529, ZBTB21, RELA, ZNF384, JUNB, ZBTB8A, ZNF341, ZFP64, ZNF510, ZNF362, HIF1A, PRDM12, ZNF781, ZNF518A, ZNF189, ZNF639, ZNF629, ZNF121, ZXDB, ZNF680, ZBTB11, ZNF558, ZNF213, ZNF334, ZNF140, ZNF577, NUP98-HOXA9, SPI1, ZNF664, REST, ZNF366, ZNF623, ZC3H11A, ZNF555, ZNF34
- Target gene symbol (double-evidenced CRMs): SYNJ1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159128,
- Related loop:
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32675000-32700000~~chr21:32825000-32850000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32675000-32700000~~chr21:32950000-32975000,
chr21:32675000-32700000~~chr21:33150000-33175000,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32700000-32725000~~chr21:32800000-32825000,
chr21:32700000-32725000~~chr21:32850000-32875000,
chr21:32700000-32725000~~chr21:32875000-32900000,