- Basic information
- CohesinDB ID: CDBP00417068
- Locus: chr21-32699032-32699397
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Data sourse: GSE206145
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Cell type: HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 47%,
"4_Tx": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, ZNF529, ZFP64, ZBTB44, IKZF3, ZNF189, MZF1, CDX2, ZNF629, KLF10, OCA2, ZNF561, CTCF, BAF155, ZNF528, EED, GLIS1, POU2F2, NANOG, ZNF263, ZSCAN21, ZBTB17, ZBTB48, ERG2, ERG, MYC, EZH1, SMARCA4, GRHL3, GABPA, NKX3-1, CEBPB, CREB1, FEZF1, GATA2, RUNX1, SMC1A, ZFX, ERG3, ZNF18, PRDM10, ZNF35, ZNF384, GATA4, OSR2, ARNT, ZEB2, ZNF10, SUPT5H, CDK8, ZXDB, PIAS1, ZNF136, SETDB1, KLF16, BCL11A, ZBTB7A, PHIP, FOXP1, PRDM6, NCOR2, TRP47, ZNF283, FOXA2, ZSCAN16, GTF2B, WT1, ZNF692, FOXF1, ZNF574, HOXB13, RELA, ZNF610, SP140, TAL1, ZNF143, GATA1, TLE3, SP7, ZNF334, BRD2, AR, ZBTB40, ZNF324, ZBTB42, ZBTB26, NOTCH3
- Target gene symbol (double-evidenced CRMs): SYNJ1,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000159128,
- Related loop:
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32675000-32700000~~chr21:32825000-32850000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32675000-32700000~~chr21:32950000-32975000,
chr21:32675000-32700000~~chr21:33150000-33175000,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32675000-32700000~~chr21:33400000-33425000,
chr21:32700000-32725000~~chr21:32800000-32825000,
chr21:32700000-32725000~~chr21:32850000-32875000,
chr21:32700000-32725000~~chr21:32875000-32900000,