- Basic information
- CohesinDB ID: CDBP00417072
- Locus: chr21-32710895-32711202
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 60%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF426, ZNF697, ZSCAN5C, XBP1, PATZ1, ZNF101, ATF3, INSM2, ZFP64, ZNF362, ZBTB44, PRDM1, IKZF3, ATF4, PRDM12, ZNF189, ZNF629, KLF10, ZNF561, ZNF577, CTCF, E2F6, ZNF555, GLIS1, ZSCAN21, ZBTB17, ZNF433, ZBTB48, ZBTB21, ZBTB8A, TSHZ1, NKX2-1, NKX3-1, ZNF639, KMT2A, ZBTB11, KLF8, ZNF292, SIX2, ZNF554, ZBTB24, ZNF335, ZNF770, ZNF654, ZNF18, PRDM10, MEF2A, ZNF384, ZNF35, OSR2, ZNF184, ZNF781, ATF2, ZNF518A, ZEB2, ZNF10, SUPT5H, ZEB1, ZNF558, ZXDB, ZNF22, NKX2-5, REST, OVOL3, PHIP, PRDM6, ZNF623, ZNF34, ZNF394, MEF2B, ZNF600, ZNF692, ZSCAN16, WT1, ZNF574, MEF2C, ZNF580, ZNF266, ZNF510, ZNF610, MAX, SP7, ZNF791, ZNF354C, ZNF530, PKNOX1, ZNF213, ZBTB6, ZNF140, BRD2, AR, ZNF324, RBAK, ZNF366, ZSCAN23, ZNF24
- Target gene symbol (double-evidenced CRMs): URB1,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops