- Basic information
- CohesinDB ID: CDBP00417073
- Locus: chr21-32711670-32712519
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Data sourse: ENCSR000EAC, GSE62063, ENCSR000DZP
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Cell type: GM12878, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 53%,
"15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBX5, XBP1, FOXA1, NFIC, ZBTB44, RUNX3, IKZF3, PRDM1, CBFB, PAX5, MITF, ZNF629, TEAD1, BCLAF1, TRIM28, ESR1, OCA2, TP73, CTCF, TCF12, LMO1, IRF4, ZNF528, FOXA3, ZNF175, RBPJ, EED, POU2F2, CDK7, RUNX1T1, TOP2A, ZNF317, ZBTB17, MTA2, ERG, MYC, GRHL3, GABPA, STAT3, TERF2, ZNF639, NR3C1, KMT2A, CREB1, EZH2, SPI1, GATA2, FLI1, ZNF766, RELB, ZNF76, RUNX1, BCL6, SMC1A, CEBPA, ZFX, ZBTB12, PRDM10, MEF2A, CREBBP, ZBTB2, ZNF35, RUNX2, GATA4, ZNF184, ARNT, ATF2, ZEB2, SUPT5H, CDK8, MED1, TERF1, MYB, SCRT2, MAFK, SP1, BCL11A, NR4A1, ATF7, POU2F3, ASH2L, HOXA9, PHIP, BCOR, FOXP1, TCF3, PRDM6, NCOR2, MLLT1, ZNF394, NFATC3, ZNF283, MEF2B, FOXA2, EBF1, ZNF600, ZNF692, GTF2B, MEF2C, CDK9, KDM1A, RELA, JUNB, SKIL, HIF1A, OTX2, GATA3, BATF, TAL1, MAX, GATA1, ZNF143, SP7, NR2F2, NR2F1, TP53, MED, ZNF334, TBX21, BHLHE40, AR, TAF1, ZNF324, ZNF366, NCOR1, BRD4, SCRT1, ZSCAN23, AHR
- Target gene symbol (double-evidenced CRMs): URB1,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops