- Basic information
- CohesinDB ID: CDBP00417076
- Locus: chr21-32721403-32721642
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 73%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): URB1,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142207,
ENSG00000159082,
- Related loop:
chr21:29050000-29075000~~chr21:32725000-32750000,
chr21:31675000-31700000~~chr21:32725000-32750000,
chr21:32300000-32325000~~chr21:32725000-32750000,
chr21:32350000-32375000~~chr21:32725000-32750000,
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32375000-32400000~~chr21:32725000-32750000,
chr21:32400000-32425000~~chr21:32725000-32750000,
chr21:32600000-32625000~~chr21:32725000-32750000,
chr21:32625000-32650000~~chr21:32725000-32750000,
chr21:32652386-32654426~~chr21:32726210-32729172,
chr21:32687246-32688984~~chr21:32726251-32729172,
chr21:32700000-32725000~~chr21:32800000-32825000,
chr21:32700000-32725000~~chr21:32850000-32875000,
chr21:32700000-32725000~~chr21:32875000-32900000,
chr21:32725000-32750000~~chr21:32850000-32875000,
chr21:32725000-32750000~~chr21:33350000-33375000,
chr21:32725000-32750000~~chr21:33375000-33400000,
chr21:32725000-32750000~~chr21:33525000-33550000,
chr21:32725000-32750000~~chr21:33550000-33575000,