- Basic information
- CohesinDB ID: CDBP00417080
- Locus: chr21-32757827-32758170
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Data sourse: ENCSR153HNT, GSE73207
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Cell type: K-562, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 69%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, HMG20A, SOX2, XBP1, FOXA1, RBFOX2, HNRNPK, ATF3, ZNF362, ZBTB44, PRDM1, CHD7, GLYR1, ZNF189, ZSCAN4, MAF, TEAD1, TRIM28, SAP30, ESR1, OCA2, CTCF, JUN, EP300, BAF155, LMO1, SOX5, GATA6, PAX8, DPF2, TEAD4, FOXA3, GATAD2A, PDX1, TFAP2C, GLIS1, NANOG, ZNF263, POU5F1, TOP2A, CDK7, RUNX1T1, ZBTB17, ZBTB48, ZSCAN5A, DUX4, SP4, ERG, ASCL1, OGG1, ZNF341, ETS1, MYC, ONECUT1, SMARCA4, RAD21, GRHL3, NKX2-1, GABPA, SOX10, NKX3-1, IKZF1, RCOR1, NFE2, ZNF639, ESRRA, KMT2A, EZH2, KLF8, GRHL2, FEZF1, SPI1, HDAC2, GATA2, ZIM3, ZNF554, RUNX1, CEBPA, NKX2-2, SOX13, ZFX, ZNF513, TWIST1, ZNF384, SMAD2, GATA4, OSR2, ZNF184, ARNT, PBX4, DAXX, SOX11, PRDM9, SMAD4, HMBOX1, SUPT5H, FOS, CDK8, MED1, ZXDB, MYB, PIAS1, ZNF22, RBM22, MAFK, SP1, BCL11A, POU2F3, ASH2L, FOXP1, PRDM6, SMC3, ZNF283, PPARG, FOXA2, NFATC1, PAF1, ZNF600, GTF2B, WT1, CDK9, HOXB13, KDM1A, ZNF19, RELA, NEUROD1, JUNB, SP140, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, AGO2, ZNF143, HAND2, SP7, NCOA3, TCF7L2, TP53, ZNF334, PHOX2B, T, AR, ZNF366, BRD4, JUND, ZZZ3, FOSL2
- Target gene symbol (double-evidenced CRMs): GART,URB1,SYNJ1,PAXBP1,SCAF4,SON,DONSON
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156304,
ENSG00000142207,
ENSG00000159082,
ENSG00000159086,
ENSG00000159131,
ENSG00000159140,
ENSG00000159147,
- Related loop:
chr21:29025000-29050000~~chr21:32750000-32775000,
chr21:29050000-29075000~~chr21:32750000-32775000,
chr21:31675000-31700000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:32325000-32350000~~chr21:32750000-32775000,
chr21:32350000-32375000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32650000-32675000~~chr21:32750000-32775000,
chr21:32750000-32775000~~chr21:33525000-33550000,
chr21:32750000-32775000~~chr21:33550000-33575000,
chr21:8200000-8225000~~chr21:32750000-32775000,