- Basic information
- CohesinDB ID: CDBP00417083
- Locus: chr21-32775215-32775819
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 58%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GLIS1, OSR2, ZFX, ZBTB17, PRDM10
- Target gene symbol (double-evidenced CRMs): PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000159086,
- Related loop:
chr21:29025000-29050000~~chr21:32750000-32775000,
chr21:29050000-29075000~~chr21:32750000-32775000,
chr21:31675000-31700000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:32325000-32350000~~chr21:32750000-32775000,
chr21:32350000-32375000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32650000-32675000~~chr21:32750000-32775000,
chr21:32687493-32688873~~chr21:32770782-32773207,
chr21:32750000-32775000~~chr21:33525000-33550000,
chr21:32750000-32775000~~chr21:33550000-33575000,
chr21:32770202-32773460~~chr21:32825782-32827847,
chr21:32770305-32773399~~chr21:32825812-32827756,
chr21:32770782-32773207~~chr21:32826025-32827540,
chr21:32771496-32773602~~chr21:32819061-32820656,
chr21:8200000-8225000~~chr21:32750000-32775000,