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Basic information

CohesinDB ID: CDBP00417084

Locus: chr21-32779682-32780212

Data sourse: GSE206145-NatGen2015, ENCSR153HNT, GSE86191

Cell type: K-562, Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 69%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, SKI, MEF2B, SMC1A, ZFX, ZBTB48, WT1, MEF2C, RELA, HDGF, MECOM, MAX, MITF, ARNTL, PLAG1, ELF1, MLL, USF2, EVI1, USF1, SPI1, BCL11A, TBX21, BHLHE40, IRF1, INTS13, RAD51, BRD4

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00417084