- Basic information
- CohesinDB ID: CDBP00417086
- Locus: chr21-32787456-32787955
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Data sourse: GSE50893, ENCSR000EAC, GSE93080
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Cell type: GM12878, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, SMC1A, POU5F1, ZSCAN5C, TOP2A, PRDM1, GRHL3, DUX4, FOXA1, ZNF334, CBX8, CTCF
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
- Related loop:
chr21:32781484-32783866~~chr21:32825796-32827937,
chr21:32781555-32783879~~chr21:32825805-32827853,
chr21:32781953-32783489~~chr21:32825818-32827753,
chr21:32782012-32783834~~chr21:32825823-32827722,
chr21:32782063-32783530~~chr21:32825910-32827724,
chr21:32782069-32783524~~chr21:32825838-32827744,
chr21:32782107-32783797~~chr21:32825805-32827961,
chr21:32782109-32783791~~chr21:32825782-32827847,
chr21:32782139-32783507~~chr21:32825860-32827784,
chr21:32782221-32783814~~chr21:32825812-32827756,
chr21:32782266-32783476~~chr21:32825782-32827815,