- Basic information
- CohesinDB ID: CDBP00417091
- Locus: chr21-32803790-32803983
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Data sourse: GSE73207
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Cell type: TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, SMC1A, FOXA2, RBBP5, RUNX1T1, ZFX, ZNF600, ZNF692, ZBTB17, ZBTB48, WT1, ZSCAN16, FOXA1, ZNF574, CBX8, MEF2C, PRDM10, RELA, BMI1, GATA4, OSR2, ZBTB44, CHD7, GRHL3, RUNX3, GATA3, FOS, ZNF320, ZNF467, VDR, CBX2, SP7, ZXDB, ZNF121, EZH2, TP53, EVI1, CTCF, JUN, SPI1, BCL11A, REST, GATA2, FLI1, RNF2, SCRT1, PHIP, BRD4, MAZ, PRDM6, MRTFB, EED
- Target gene symbol (double-evidenced CRMs): URB1,TIAM1,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 1
- Related genes and loops