- Basic information
- CohesinDB ID: CDBP00417107
- Locus: chr21-32856932-32857599
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Data sourse: ENCSR000BLD, GSE67783, GSE98367, GSE138405, GSE110061, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, GSE68388
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Cell type: RPE, H1-hESC, Macrophage, Fibroblast, HCT-116, Hela-Kyoto, GM12878, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 38%,
"14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX1, CBX3, TRIM24, TRIM28, PIAS1, ZFX, ZFP36, ZNF708, SETDB1, ZNF280A, CTCF
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops