- Basic information
- CohesinDB ID: CDBP00417108
- Locus: chr21-32858640-32859762
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, GSE206145, GSE25021
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Cell type: RPE, H1-hESC, HCT-116, Hep-G2, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 37%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CHD8, MYCN, POU5F1, SIRT6, KDM4C, ZFX, NFKBIA, XBP1, ZBTB48, ZSCAN5A, WT1, TET2, YY1, RELA, ZNF341, ATF3, MYC, EZH1, RAD21, SP140, GRHL3, ETV6, TP63, ZNF143, CHD1, TRIM28, ZNF680, ESR1, OCA2, GRHL2, CTCF, GSPT2, AR, REST, HEXIM1, HSF1, NOTCH3, BRD4, CLOCK, MAZ, AATF, ZNF528, SMC3, HCFC1R1, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops