- Basic information
- CohesinDB ID: CDBP00417109
- Locus: chr21-32861838-32862114
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Data sourse: GSE116344, GSE206145-NatGen2015
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Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 41%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CEBPA, EZH2phosphoT487, FOXA2, SOX2, ZFX, NME2, ZBTB48, FOXA1, DDX5, HOXB13, ERG, RELA, ZNF384, ATF3, GRHL3, OTX2, ATF2, GABPA, STAT3, MAX, MYOG, CEBPB, KMT2A, CREB1, ZNF573, EZH2, JUN, BCL11A, AR, GATA2, ATF7, RNF2, JUND, BRD4, FOXP1, ZNF677, ZNF350, TFAP2C
- Target gene symbol (double-evidenced CRMs): PAXBP1,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops