- Basic information
- CohesinDB ID: CDBP00417111
- Locus: chr21-32865099-32865345
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Data sourse: GSE120943, ENCSR153HNT, GSE98367
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Cell type: K-562, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, POU2F2, CHD8, ZFX, NME2, HNRNPK, YY1, RELA, ZNF19, EZH1, PRDM1, GRHL3, HIF1A, ARNT, ZSCAN4, ZNF320, ARNTL, KLF4, SCRT2, EZH2, OCA2, CTCF, ZKSCAN5, MNT, RNF2, SRSF9, SCRT1, BRD4, SMC3
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops