- Basic information
- CohesinDB ID: CDBP00417114
- Locus: chr21-32868648-32869243
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Data sourse: GSE116344, GSE118494, GSE67783, GSE83726
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Cell type: RH4, HSPC, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 41%,
"15_Quies": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, POU2F2, CHD8, PPARG, FOXA2, POU5F1, ZSCAN5D, PGR, SOX2, ZFX, POU4F2, XBP1, GTF2B, DUX4, ZSCAN5A, ZBTB48, FOXA1, WT1, CTBP1, CBX8, MTA2, TBP, PRDM10, HNRNPK, ERG, RELA, ZBTB2, ASCL1, GATA4, GR, CHD7, GRHL3, HIF1A, PROX1, GATA3, SMC3, PRDM9, MECOM, GABPA, TOP2A, ZEB2, NKX3-1, FOS, CDK8, ZNF143, GATA1, ZNF736, DACH1, GMEB1, KLF4, TEAD1, CEBPD, SCRT2, PIAS1, MCM7, EZH2, STAG1, TP53, ESR1, ZBTB6, GRHL2, ZNF334, MYOD1, CTCF, SPI1, BAF155, AR, PAX3-FOXO1, GATA6, HDAC2, GATA2, ZNF146, ZNF366, ASH2L, RNF2, NOTCH3, JUND, SCRT1, EED, TEAD4, PDX1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops