- Basic information
- CohesinDB ID: CDBP00417117
- Locus: chr21-32878661-32879234
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Data sourse: GSE98367
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Cell type: Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 46%,
"14_ReprPCWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, CEBPA, STAT1, FOXA1, SUZ12, HOXB13, ERG, RELA, RAD21, GABPA, SPIB, GATA1, GFI1, NR3C1, JMJD1C, CEBPB, MAF, TRIM28, KMT2A, CREB1, EZH2, CTCF, ELF3, SP1, SPI1, BCL11A, AR, INTS13, GATA2, BRD4
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
- Related loop:
chr21:32625000-32650000~~chr21:32850000-32875000,
chr21:32650000-32675000~~chr21:32875000-32900000,
chr21:32700000-32725000~~chr21:32850000-32875000,
chr21:32700000-32725000~~chr21:32875000-32900000,
chr21:32725000-32750000~~chr21:32850000-32875000,
chr21:32850000-32875000~~chr21:32950000-32975000,
chr21:32850000-32875000~~chr21:33125000-33150000,
chr21:32850000-32875000~~chr21:33175000-33200000,
chr21:32883476-32884977~~chr21:33126076-33128364,