- Basic information
- CohesinDB ID: CDBP00417118
- Locus: chr21-32884034-32884908
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Data sourse: ENCSR000BLD, GSE72082, GSE105028, GSE25021, GSE131606, ENCSR000BTU, ENCSR000EAC, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE116344, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, GSE97394, GSE110061, GSE129526, ENCSR153HNT, GSE68388, GSE83726, GSE50893
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Cell type: RH4, GM19240, HuCC-T1, H9-hESC, GM2630, Ishikawa, GM12890, K-562, DKO, H1-hESC, GM12878, GM12891, GM2588, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.767
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 49%,
"15_Quies": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CHD8, CBX3, MYCN, CREM, TEAD4, CTBP1, XBP1, ZSCAN21, ZFX, SMAD3, ZBTB48, WT1, PBX2, ERG, YY1, RELA, ZBTB2, JUNB, ATF3, MYC, ZFP64, THAP1, CTCFL, RAD21, SP140, ZFP36, HIF1A, ATF2, MAX, XRCC5, NKX3-1, MTA1, RCOR1, TERF2, ESRRA, TEAD3, ELF1, PML, CREB1, SCRT2, NFE2L2, EZH2, NR2F1, ESR1, OCA2, CTCF, JUN, BRD2, BCL11A, SPI1, HNF4A, PHF20, REST, SIX2, ATF7, HCFC1, NOTCH3, JUND, BRD4, CLOCK, E2F1, SMC3, ATF1, STAG1
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops