- Basic information
- CohesinDB ID: CDBP00417121
- Locus: chr21-32888987-32890040
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Data sourse: GSE116344, GSE206145-NatGen2015
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Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 42%,
"15_Quies": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MYCN, EZH2phosphoT487, TOP2A, SOX2, ZFX, CTBP1, NME2, LDB1, ZBTB48, DUX4, FOXA1, CDK9, ERG, RELA, IRF2, CREBBP, RUNX2, EZH1, RAD21, PRDM1, ARNT, HIF1A, CHD7, SMARCE1, MAX, XRCC5, ETV6, SNRNP70, MED1, ARNTL, NR3C1, MYOG, TEAD1, KMT2A, RBM39, PIAS1, EZH2, TP53, ZNF334, MYOD1, CTCF, USF1, SPI1, IRF1, IRF4, FLI1, ASH2L, BRD4, SCRT1, MYF5, STAG1
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops