- Basic information
- CohesinDB ID: CDBP00417122
- Locus: chr21-32890730-32891032
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"14_ReprPCWk": 48%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, SMC1A, TBL1X, MYCN, POU2F2, TOP2A, SOX2, ZFX, XBP1, ASH1L, ZBTB48, WT1, ZSCAN21, FOXA1, ZSCAN5A, DUX4, ERG3, DDX5, ERG2, PHB2, TBP, PRDM10, RELA, ZBTB2, ZNF384, EHMT2, MYC, ZBTB5, ARID1B, SP140, PRDM1, ZNF184, GABPA, MITF, ZNF639, ZNF736, ZNF467, GMEB1, NR3C1, ELF1, TRIM28, ZNF512, CREB1, EZH2, LMO2, OCA2, KLF8, NCOA1, ZNF334, USF2, SETDB1, EGR2, ZNF22, CTCF, JUN, USF1, ZNF12, MNT, AR, DPF2, HDAC2, GATA2, ZBTB40, PAX8, GATAD2B, ZNF366, ZNF407, RBAK, RBM25, RAD51, NOTCH3, BRD4, ZNF512B, ATM, CLOCK, MAZ, BRCA1, STAG1
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops