- Basic information
- CohesinDB ID: CDBP00417128
- Locus: chr21-32916458-32917800
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, GSE72082, ENCSR000FAD, ENCSR000BSB, GSE126634, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE121355, GSE103477, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE25021, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE115250, GSE138405, GSE86191, GSE76893, GSE101921, ENCSR806UKK, GSE152721, GSE120943, GSE51234, GSE206145-NatGen2015, GSE116344, GSE94872, ENCSR000EEG, GSE98367, ENCSR000BLS, ENCSR000ECE, ENCSR981FDC, ENCSR000BMY, ENCSR620NWG, ENCSR767DFK, ENCSR000BTQ, ENCSR167MTG, GSE110061, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
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Cell type: MDM, RH4, GM10847, GM2610, HSPC, GP5d, HuCC-T1, H9-hESC, GM2630, Fibroblast, HeLa-S3, K-562, GM18486, DKO, H1-hESC, GM18951, Monocytes, GM12878, SK-N-SH, GM19239, RT-112, GM19193, GM19099, Macrophage, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, HCAEC, GM19238, TC-71, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 21% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.611
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 37%,
"14_ReprPCWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, POU2F2, CHD8, SMC1A, PGR, ZNF263, MYCN, RUNX1T1, POU5F1, NME2, MIER2, ZFX, XBP1, ZBTB48, ZSCAN5A, WT1, FOXA1, SRF, ERG3, TET2, DDX5, PBX2, ZNF549, ZKSCAN1, KDM1A, ERG, RELA, ZBTB2, MIER1, RUNX2, MYC, CTCFL, RAD21, CHD7, SP140, SMC3, GABPA, STAT3, XRCC5, ZNF143, CDK8, GATA1, NR3C1, TEAD3, ZNF416, TRIM28, NR2F2, ETV1, EZH2, TP53, PKNOX1, ESR1, SETDB1, CTCF, SPI1, BCL11A, SP1, AR, REST, GATA2, POU2F3, FLI1, ZBTB26, ASH2L, NOTCH3, BRD4, TCF3, E2F1, SMC1, ZNF280A, TEAD4, HKR1, EHMT2
- Target gene symbol (double-evidenced CRMs): TMEM50B,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32900000-32925000~~chr21:33000000-33025000,
chr21:32900000-32925000~~chr21:33100000-33125000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33375000-33400000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32920781-32922713~~chr21:33126530-33128463,
chr21:32921032-32922590~~chr21:33126606-33128591,
chr21:32921094-32922827~~chr21:33126568-33128575,
chr21:32921102-32922797~~chr21:33126505-33128560,
chr21:32921110-32922482~~chr21:33126613-33128557,
chr21:32921135-32922576~~chr21:33126574-33128587,
chr21:32921135-32922576~~chr21:33196131-33197893,
chr21:32921166-32922522~~chr21:33126076-33128364,
chr21:32921267-32922473~~chr21:33126551-33128322,