- Basic information
- CohesinDB ID: CDBP00417132
- Locus: chr21-32926434-32926668
-
Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 55%,
"9_Het": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, TRIM28, ZFX, XBP1, ARNT, OCA2, ZNF316, YY1
- Target gene symbol (double-evidenced CRMs): IFNAR1,TMEM50B,IFNGR2,SYNJ1
- Function elements
- Human SNPs: Cortical_surface_area
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:32925000-32950000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32825000-32850000~~chr21:32925000-32950000,
chr21:32900000-32925000~~chr21:33000000-33025000,
chr21:32900000-32925000~~chr21:33100000-33125000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33375000-33400000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32920781-32922713~~chr21:33126530-33128463,
chr21:32921032-32922590~~chr21:33126606-33128591,
chr21:32921094-32922827~~chr21:33126568-33128575,
chr21:32921102-32922797~~chr21:33126505-33128560,
chr21:32921110-32922482~~chr21:33126613-33128557,
chr21:32921135-32922576~~chr21:33126574-33128587,
chr21:32921135-32922576~~chr21:33196131-33197893,
chr21:32921166-32922522~~chr21:33126076-33128364,
chr21:32921267-32922473~~chr21:33126551-33128322,
chr21:32925000-32950000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33050000-33075000,
chr21:32925000-32950000~~chr21:33100000-33125000,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32925000-32950000~~chr21:33325000-33350000,
chr21:32925000-32950000~~chr21:33375000-33400000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33450000-33475000,