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Basic information

CohesinDB ID: CDBP00417135

Locus: chr21-32934017-32934551

Data sourse: GSE116344, GSE206145-NatGen2015, GSE86191

Cell type: RH4, Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 60%, "14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MED1, CBX2, CREBBP, ZNF283, DPF2, ZNF90, POU5F1, EZH2phosphoT487, ZFX, ZNF534, EZH2, RAD21, ZBTB48, DDX5, PRDM10

Target gene symbol (double-evidenced CRMs): IFNGR2,IFNAR1,SYNJ1,TMEM50B

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159082, ENSG00000142166, ENSG00000159128, ENSG00000142188,

eachgene

Deatailed information for cohesin site CDBP00417135