- Basic information
- CohesinDB ID: CDBP00417137
- Locus: chr21-32943893-32944726
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015
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Cell type: RPE, Fibroblast, HCT-116, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 53%,
"15_Quies": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPA, LDB1, TOP2A, ZFX, NME2, DDX5, RELA, SP140, GRHL3, HIF1A, PRDM9, SMAD4, TAL1, ZSCAN4, SP2, ZNF143, MITF, ZNF750, TEAD3, ZNF121, EZH2, ZNF3, USF2, JUN, CTCF, USF1, TFE3, BHLHE40, HNF4A, YAP1, BRD4, MAZ, TEAD4, STAG1
- Target gene symbol (double-evidenced CRMs): IFNAR1,IFNGR2,SYNJ1,TMEM50B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:32925000-32950000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32825000-32850000~~chr21:32925000-32950000,
chr21:32925000-32950000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33050000-33075000,
chr21:32925000-32950000~~chr21:33100000-33125000,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32925000-32950000~~chr21:33325000-33350000,
chr21:32925000-32950000~~chr21:33375000-33400000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33450000-33475000,
chr21:32939527-32941602~~chr21:33126568-33128575,
chr21:32939550-32941640~~chr21:33126505-33128560,
chr21:32939565-32941655~~chr21:33126529-33128418,
chr21:32939574-32941665~~chr21:33126530-33128463,
chr21:32939576-32941702~~chr21:33126588-33128342,
chr21:32939583-32941572~~chr21:33126549-33128537,
chr21:32939598-32941625~~chr21:33196237-33197895,
chr21:32939598-32941688~~chr21:33126574-33128599,
chr21:32939603-32941698~~chr21:33126574-33128587,
chr21:32939611-32941443~~chr21:33126633-33128265,
chr21:32939614-32941661~~chr21:33126551-33128322,
chr21:32939617-32941600~~chr21:33196262-33197907,
chr21:32939619-32941696~~chr21:33196164-33197927,
chr21:32939647-32941630~~chr21:33126534-33128328,
chr21:32939664-32941472~~chr21:33126606-33128591,
chr21:32939673-32941295~~chr21:33196226-33197905,
chr21:32939681-32941566~~chr21:33444394-33446526,
chr21:32939696-32941568~~chr21:33126563-33128587,
chr21:32939770-32941261~~chr21:33196285-33197839,
chr21:32939854-32941385~~chr21:33126587-33128243,
chr21:32939856-32941390~~chr21:33126650-33128283,
chr21:32939856-32941390~~chr21:33195966-33197950,