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Basic information

CohesinDB ID: CDBP00417139

Locus: chr21-32951208-32951430

Data sourse: ENCSR000BLD, GSE67783

Cell type: H1-hESC, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 44%, "13_ReprPC": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, FOXA1, SUZ12, PBX2, ZFHX2, BMI1, CHD7, PRDM1, TRIM28, LMO2, ESR1, USF2, CTCF, EP300, KLF1, LMO1, PAX8, RAD51, TEAD4, RBPJ, NANOG, CHD8, POU2F2, ZSCAN5D, POU5F1, MYCN, ID3, ZBTB17, ZBTB48, ZSCAN5A, ERG2, ERG, PBX1, NFKB2, MYC, SMARCA4, RAD21, NKX2-1, GABPA, NFE2, ARNTL, NR3C1, CEBPB, KMT2A, EZH2, HDAC2, INTS13, FLI1, ZIM3, EZH2phosphoT487, ZFX, TET2, CBX8, ERG3, ZNF770, ZNF384, GR, ARNT, ATF2, MED1, ZNF264, MYB, ZNF22, USF1, BCL11A, MAFK, REST, TCF3, SMC3, STAG1, TRP47, PPARG, SS18, WT1, KDM1A, YY1, RELA, NEUROD1, SP140, OTX2, TAL1, NRIP1, GATA1, PLAG1, CBX2, ZNF334, NFKB1, EGR2, AR, ZBTB16, EGR1, RNF2, BRD4, CLOCK, MAZ

Target gene symbol (double-evidenced CRMs): IFNAR1,TMEM50B,SYNJ1,AP000295.1,IL10RB

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159082, ENSG00000249624, ENSG00000243646, ENSG00000142166, ENSG00000142188,

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Deatailed information for cohesin site CDBP00417139