- Basic information
- CohesinDB ID: CDBP00417143
- Locus: chr21-32965025-32966085
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Data sourse: GSE126634, GSE152721
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Cell type: HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 58%,
"15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, POU2F2, POU5F1, SOX2, NME2, ZFX, XBP1, DUX4, ZBTB48, STAT1, FOXA1, ZSCAN5A, PBX2, CDK9, ERG, YY1, RELA, PBX1, NEUROD1, MYC, CHD7, GRHL3, ARNT, OTX2, GATA3, NKX2-1, ZSCAN4, NCOA3, ELF1, TRIM28, EZH2, ZNF334, ZSCAN22, CTCF, JUN, SPI1, KLF1, BRD4, SMC3
- Target gene symbol (double-evidenced CRMs): IL10RB,TMEM50B,AP000295.1,SYNJ1,IFNAR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159082,
ENSG00000249624,
ENSG00000243646,
ENSG00000142166,
ENSG00000142188,
- Related loop:
chr21:32650000-32675000~~chr21:32950000-32975000,
chr21:32675000-32700000~~chr21:32950000-32975000,
chr21:32825000-32850000~~chr21:32950000-32975000,
chr21:32850000-32875000~~chr21:32950000-32975000,
chr21:32950000-32975000~~chr21:33125000-33150000,
chr21:32950000-32975000~~chr21:33300000-33325000,
chr21:32950000-32975000~~chr21:33450000-33475000,