- Basic information
- CohesinDB ID: CDBP00417152
- Locus: chr21-32986202-32986308
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 65%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, MYCN, ZNF263, KDM4C, ZFX, NME2, XBP1, DUX4, FOXA1, FOXF1, YY1, RELA, ZNF384, PBX1, ATF3, EOMES, GRHL3, ATF2, ZSCAN4, GATA1, ZNF143, ZFP69B, CREB1, SCRT2, NEUROG2, EZH2, ZNF334, JUN, CTCF, SPI1, AR, PAX3-FOXO1, TAF1, NOTCH3, BRD4, SCRT1, TCF3, CLOCK, SMC3
- Target gene symbol (double-evidenced CRMs): TMEM50B,IFNGR2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops