- Basic information
- CohesinDB ID: CDBP00417158
- Locus: chr21-33000370-33000563
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Data sourse: ENCSR000BLD, GSE98367
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Cell type: H1-hESC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 56%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, POU2F2, XBP1, ZNF384, ZNF90, MYC, NFIC, GRHL3, ARNT, HIF1A, RXRA, PRDM9, MAX, ZNF143, PLAG1, EZH2, USF2, USF1, PAX3-FOXO1, GATA6, EGLN2, IRF4, RAD51, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:32825000-32850000~~chr21:32975000-33000000,
chr21:32825000-32850000~~chr21:33000000-33025000,
chr21:32900000-32925000~~chr21:33000000-33025000,
chr21:32975000-33000000~~chr21:33125000-33150000,
chr21:32975000-33000000~~chr21:33150000-33175000,
chr21:32975000-33000000~~chr21:33175000-33200000,
chr21:32975000-33000000~~chr21:33375000-33400000,
chr21:32975000-33000000~~chr21:33425000-33450000,
chr21:32993264-32995466~~chr21:33126574-33128587,
chr21:32993440-32995435~~chr21:33126529-33128418,
chr21:32993440-32995435~~chr21:33196275-33197980,
chr21:32993453-32995444~~chr21:33126567-33128707,
chr21:32993483-32995508~~chr21:33126530-33128463,
chr21:32993520-32995460~~chr21:33126551-33128322,
chr21:32993555-32995462~~chr21:33196237-33197895,
chr21:32993664-32995444~~chr21:33126650-33128283,
chr21:32993664-32995444~~chr21:33195966-33197950,
chr21:33000000-33025000~~chr21:33100000-33125000,
chr21:33000000-33025000~~chr21:33125000-33150000,