- Basic information
- CohesinDB ID: CDBP00417166
- Locus: chr21-33014457-33014825
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Data sourse: GSE83726, GSE98367
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Cell type: RH4, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 47%,
"13_ReprPC": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: EBF1, CRY1, SS18, ZFX, XBP1, STAT1, KDM1A, ERG, RELA, ATF3, MYC, ETS1, ARNT, GRHL3, TCF4, MAX, ZNF143, MYOG, TRIM28, EZH2, OCA2, KLF9, USF2, MYOD1, CTCF, USF1, SPI1, SIX5, RBM25, HCFC1, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops