- Basic information
- CohesinDB ID: CDBP00417167
- Locus: chr21-33017088-33018015
-
Data sourse: ENCSR895JMI, GSE93080, GSE206145-GSE177045, GSE138405, GSE206145-NatGen2015, ENCSR000EDE, GSE103477, ENCSR703TNG, GSE50893
-
Cell type: MCF-7, MDM, Fibroblast, Hela-Kyoto, SNYDER, GM12878, A-549, GM12891, GM2588, HeLa-S3, GM19238, GM19239
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"13_ReprPC": 52%,
"14_ReprPCWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, TOP2A, SS18, ZSCAN16, FOXF1, FOXA1, SUZ12, ERG, ZBTB2, ZNF384, GR, RAD21, GABPA, NKX3-1, ZNF143, GATA1, NR3C1, EZH2, ESR1, CTCF, SPI1, AR, GATA2, POU2F3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops