- Basic information
- CohesinDB ID: CDBP00417170
- Locus: chr21-33035105-33037170
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Data sourse: ENCSR000BLD, ENCSR000EFJ, GSE67783, GSE86191, GSE131956, GSE98367, ENCSR000BLY, GSE94872, GSE206145, GSE101921, GSE55407, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE68388, GSE83726, GSE103477, GSE111537, GSE126755, GSE165895
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Cell type: RH4, HuCC-T1, RPE, Fibroblast, Neutrophil, IMR-90, K-562, HFFc6, H1-hESC, Monocytes, GBM39, SK-N-SH, THP-1, Macrophage, HCT-116, HUVEC, HCAEC, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 34%,
"13_ReprPC": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, XBP1, PATZ1, SUZ12, TFAP4, LYL1, ATF3, NFIC, CHD7, CBFB, MECOM, JMJD1C, INTS11, TRIM28, ETV1, LMO2, ESR1, MLL, CTCF, TCF12, JUN, EP300, BAF155, KLF1, LMO1, IRF4, TRIM24, E2F1, SMC1, TEAD4, KMT2B, TFAP2C, JARID2, GLIS1, POU2F2, CHD8, BRD3, MYCN, RUNX1T1, POU5F1, TOP2A, ZSCAN21, ZBTB17, ZBTB48, ERF, STAT1, MLLT3, ERG, HOXC5, ETS1, MYC, EZH1, SMARCA4, RAD21, FOXP2, RXRA, BATF3, GABPA, NFE2, VDR, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, EZH2, ZHX2, SPI1, HDAC2, GATA2, INTS13, FLI1, MRTFB, RUNX1, SMC1A, CEBPA, ZFX, SMAD3, ERG3, SMARCC1, RARA, NOTCH1, RUNX2, DAXX, HMGB2, PBX3, FOS, CDK8, MED1, MYB, EVI1, STAT5A, MAFK, BCL11A, NR4A1, REST, BCOR, TCF3, GLIS2, STAG1, STAG2, SKI, TBL1X, MEIS1, ZNF600, WT1, MEF2C, CDK9, KDM1A, RELA, JUNB, SP140, ZIC2, GATA3, BATF, TAL1, MAX, NEUROG2, KDM5B, TP53, MED, BRD2, TBX21, BHLHE40, AR, ZBTB16, ZNF324, EGR1, HSF1, BRD4, JUND, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): IFNGR2,TMEM50B,IFNAR1,EVA1C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32500000-32525000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33025000-33050000,
chr21:33025000-33050000~~chr21:33125000-33150000,
chr21:33025000-33050000~~chr21:33325000-33350000,
chr21:33025000-33050000~~chr21:33375000-33400000,
chr21:33025000-33050000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33450000-33475000,
chr21:33025000-33050000~~chr21:36675000-36700000,
chr21:33025000-33050000~~chr21:36700000-36725000,