- Basic information
- CohesinDB ID: CDBP00417174
- Locus: chr21-33046659-33047090
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Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 64%,
"13_ReprPC": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, CEBPA, POU5F1, SS18, ZBTB17, MAFF, ZBTB48, FOXA1, DDX5, AHR, MYC, GRHL3, ARNT, OTX2, ATF2, PRDM9, MAX, MAFB, NKX3-1, MED1, EZH2, C11orf30, MAFK, USF1, GATA2, E2F6, SCRT1, BRD4, HCFC1R1, ZNF316
- Target gene symbol (double-evidenced CRMs): IFNAR1,IFNGR2,EVA1C,TMEM50B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
- Related loop:
chr21:32500000-32525000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33050000-33075000,
chr21:33025000-33050000~~chr21:33125000-33150000,
chr21:33025000-33050000~~chr21:33325000-33350000,
chr21:33025000-33050000~~chr21:33375000-33400000,
chr21:33025000-33050000~~chr21:33425000-33450000,
chr21:33025000-33050000~~chr21:33450000-33475000,
chr21:33025000-33050000~~chr21:36675000-36700000,
chr21:33025000-33050000~~chr21:36700000-36725000,
chr21:33050000-33075000~~chr21:33450000-33475000,