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Basic information

CohesinDB ID: CDBP00417175

Locus: chr21-33047338-33047839

Data sourse: ENCSR153HNT, ENCSR000BLY, GSE68388

Cell type: K-562, HuCC-T1, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 50%, "13_ReprPC": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, CEBPA, NKX2-2, MYCN, EZH2phosphoT487, ZFX, DUX4, PRDM10, HOXC5, RELA, ZNF384, JUNB, ATF3, NFIC, MYC, ZNF184, GRHL3, HIF1A, ZNF189, TAL1, MAX, MAFB, PBX3, FOS, ZNF143, MED1, CEBPB, TFAP2C, EZH2, OCA2, NFKB1, JUN, TCF12, MAFK, BCL11A, EP300, GATA2, ZNF366, E2F4, BRD4, JUND, E2F1, MAZ, PDX1, ZNF316, FOSL2

Target gene symbol (double-evidenced CRMs): TMEM50B,IFNGR2,EVA1C,IFNAR1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000166979, ENSG00000142166, ENSG00000159128, ENSG00000142188,

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Deatailed information for cohesin site CDBP00417175