- Basic information
- CohesinDB ID: CDBP00417196
- Locus: chr21-33096495-33096807
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Data sourse: GSE126755, GSE98367
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Cell type: Neutrophil, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 51%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, EZH2phosphoT487, EBF1, LDB1, NME2, ZFX, ZSCAN16, GTF2B, DUX4, XBP1, STAT1, ZBTB48, WT1, CBX8, SUZ12, CDK9, ERG, YY1, RELA, ZNF384, ZNF35, PBX1, ZNF90, BMI1, MYC, ATF3, SMARCA4, CHD7, RAD21, ZFP36, ARNT, TCF4, GRHL3, OTX2, PRDM9, GABPA, BATF, TAL1, MAF1, ZSCAN4, SPIB, ZNF449, CDK8, IKZF1, SMARCE1, ZNF143, CBX2, CEBPB, JMJD1C, NCOA3, TRIM28, KMT2A, SCRT2, EZH2, ESR1, HDAC8, ZNF334, GRHL2, CTCF, SPI1, AR, GATA2, ZBTB7A, E2F6, TRIM24, RNF2, BRD4, SCRT1, JUND, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops