- Basic information
- CohesinDB ID: CDBP00417200
- Locus: chr21-33105187-33105647
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Data sourse: GSE105028, GSE97394, GSE67783
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Cell type: HUES64, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 48%,
"13_ReprPC": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, BRD1, EZH2phosphoT487, RBBP5, POU5F1, SOX2, ZNF534, ZFX, MYCN, GTF2B, SMAD3, ZSCAN5A, ZNF205, SUZ12, ZNF513, ZNF300, KDM1A, YY1, ZNF384, ZNF90, ETS1, CHD7, RAD21, ATF2, MAX, GATA1, IKZF1, CDK8, PLAG1, CBX2, ZFP69B, TRIM28, EZH2, CTCF, TCF12, USF1, EP300, SP1, PAX8, E2F6, ASH2L, CTBP2, BRD4, BCOR, NCOR2, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops