- Basic information
- CohesinDB ID: CDBP00417202
- Locus: chr21-33110916-33111383
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Data sourse: GSE67783, GSE86191, GSE105028, GSE120943, ENCSR153HNT
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Cell type: HCT-116, Monocytes, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"13_ReprPC": 65%,
"14_ReprPCWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, ZSCAN5C, ZNF660, SOX2, NME2, PATZ1, FOXA1, SUZ12, RING1B, ZFHX2, LYL1, ATF3, BMI1, ZFP64, CTCFL, CHD7, ZNF322, ZBTB44, PRDM1, CBFB, ZNF189, MECOM, TP63, ZSCAN4, MITF, ZNF467, ZNF629, JMJD1C, ELF1, TRIM28, ETV1, KLF10, LMO2, ESR1, MLL, TP73, SAP30, ZNF561, CTCF, TCF12, JUN, EP300, KLF1, ZBTB20, LMO1, GATA6, RYBP, E2F6, PRDM4, TRIM24, ZNF423, ZNF528, TEAD4, KMT2B, TFAP2C, EED, RBPJ, JARID2, GLIS1, NANOG, CHD8, BRD1, POU2F2, ZNF263, MYCN, RUNX1T1, POU5F1, TOP2A, CDK7, ZSCAN21, ZBTB17, ZBTB48, ZSCAN5A, STAT1, DDX5, ERG2, SP4, ARID3A, TBP, ERG, OGG1, ZBTB8A, ZNF341, MYC, SMARCA4, KDM4A, RAD21, GRHL3, NKX2-1, GABPA, STAT3, SOX10, ZNF398, PRDM14, RCOR1, INO80, NFE2, IKZF1, VDR, ARNTL, CEBPB, KMT2A, EZH2, GRHL2, GABPB1, SPI1, KLF17, ZBTB14, HDAC2, GATA2, INTS13, SIX2, FLI1, ZNF76, ZNF554, RUNX1, SMC1A, CEBPA, EZH2phosphoT487, SIRT6, ZNF335, ZFX, ZNF534, SIN3A, ZNF770, ERG3, TET2, CBX8, SMARCC1, PRDM10, RARA, ZNF35, ZNF384, NOTCH1, OSR2, SP3, ARNT, SOX11, PRDM9, ZEB2, FOXM1, NCAPH2, SP2, FOS, CDK8, CHD1, MED1, MYB, SCRT2, ZMYM3, KLF9, ZBTB18, EVI1, SETDB1, MAFK, BCL11A, SP1, GSPT2, ARID1A, RBM25, POU2F3, ASH2L, HNRNPLL, PHIP, TCF3, BCOR, GLIS2, FOXP1, AATF, SMC3, STAG1, MLLT1, CXXC4, ZNF394, SKI, ZNF283, CBFA2T2, MEF2B, TRP47, TBL1X, RBBP5, MEIS1, SS18, ZNF600, ZNF692, ZSCAN16, WT1, ZNF662, MEF2C, CDK9, HOXB13, KDM1A, YY1, RELA, NEUROD1, BRG1, SP140, ZIC2, HIF1A, PCGF1, TCF4, BHLHE22, ZFP36, OTX2, KLF15, GATA3, TAL1, MAX, GATA1, ZNF143, ZNF730, CBX2, BCL11B, SP7, NEUROG2, ZNF768, KDM5B, TP53, ZBTB6, MED, ZNF334, ZSCAN22, EGR2, BRD2, AR, TAF1, ZBTB16, RXR, ZNF324, ZNF366, ZBTB42, HEXIM1, TFIIIC, ZBTB26, HSF1, EGR1, BRD4, JUND, RNF2, CLOCK, MAZ, ZSCAN23, ZFP42, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops