- Basic information
- CohesinDB ID: CDBP00417209
- Locus: chr21-33130703-33133452
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE105028, GSE121355, GSE103477, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR917QNE, GSE115602, ENCSR000BTU, GSE93080, ENCSR000DZP, GSE67783, ENCSR000BKV, GSE138405, GSE76893, GSE101921, GSE120943, GSE138105, ENCSR703TNG, GSE116344, GSE145327, ENCSR000EEG, GSE98367, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, GSE97394, ENCSR000BTQ, ENCSR167MTG, GSE110061, GSE129526, GSE111913, GSE155324, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, GSE126755
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Cell type: MDM, RH4, GM10847, GM2610, SLK, GM19240, HSPC, Liver, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, RPE, Ishikawa, GM12890, HeLa-S3, GM2255, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, GM19239, RT-112, GM19193, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, A-549, HCAEC, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 25% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.489
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 61%,
"13_ReprPC": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX3-FOXO1, AR, NR3C1, PGR, ZNF121, EZH2, FOXA1, CLOCK, GABPA, TAL1, CTCF, ERG
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 23
- Related genes and loops
- Related gene:
ENSG00000159082,
- Related loop:
chr21:32402578-32404394~~chr21:33126534-33128328,
chr21:32625000-32650000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:33125000-33150000,
chr21:32825000-32850000~~chr21:33125000-33150000,
chr21:32832170-32834191~~chr21:33126567-33128707,
chr21:32832273-32833550~~chr21:33126693-33128257,
chr21:32850000-32875000~~chr21:33125000-33150000,
chr21:32856562-32857810~~chr21:33126534-33128328,
chr21:32883476-32884977~~chr21:33126076-33128364,
chr21:32920781-32922713~~chr21:33126530-33128463,
chr21:32921032-32922590~~chr21:33126606-33128591,
chr21:32921094-32922827~~chr21:33126568-33128575,
chr21:32921102-32922797~~chr21:33126505-33128560,
chr21:32921110-32922482~~chr21:33126613-33128557,
chr21:32921135-32922576~~chr21:33126574-33128587,
chr21:32921166-32922522~~chr21:33126076-33128364,
chr21:32921267-32922473~~chr21:33126551-33128322,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32939527-32941602~~chr21:33126568-33128575,
chr21:32939550-32941640~~chr21:33126505-33128560,
chr21:32939565-32941655~~chr21:33126529-33128418,
chr21:32939574-32941665~~chr21:33126530-33128463,
chr21:32939576-32941702~~chr21:33126588-33128342,
chr21:32939583-32941572~~chr21:33126549-33128537,
chr21:32939598-32941688~~chr21:33126574-33128599,
chr21:32939603-32941698~~chr21:33126574-33128587,
chr21:32939611-32941443~~chr21:33126633-33128265,
chr21:32939614-32941661~~chr21:33126551-33128322,
chr21:32939647-32941630~~chr21:33126534-33128328,
chr21:32939664-32941472~~chr21:33126606-33128591,
chr21:32939696-32941568~~chr21:33126563-33128587,
chr21:32939854-32941385~~chr21:33126587-33128243,
chr21:32939856-32941390~~chr21:33126650-33128283,
chr21:32950000-32975000~~chr21:33125000-33150000,
chr21:32975000-33000000~~chr21:33125000-33150000,
chr21:32993184-32995333~~chr21:33126574-33128599,
chr21:32993207-32995324~~chr21:33126563-33128429,
chr21:32993209-32995349~~chr21:33126505-33128560,
chr21:32993210-32995186~~chr21:33126569-33128688,
chr21:32993249-32995238~~chr21:33126606-33128591,
chr21:32993264-32995466~~chr21:33126574-33128587,
chr21:32993425-32995195~~chr21:33126574-33128362,
chr21:32993440-32995435~~chr21:33126529-33128418,
chr21:32993448-32995163~~chr21:33126629-33128592,
chr21:32993453-32995444~~chr21:33126567-33128707,
chr21:32993483-32995508~~chr21:33126530-33128463,
chr21:32993491-32995278~~chr21:33126568-33128575,
chr21:32993494-32995284~~chr21:33126613-33128557,
chr21:32993499-32995155~~chr21:33126713-33128335,
chr21:32993504-32995159~~chr21:33126652-33128492,
chr21:32993506-32995325~~chr21:33126537-33128587,
chr21:32993520-32995460~~chr21:33126551-33128322,
chr21:32993563-32995166~~chr21:33126563-33128587,
chr21:32993582-32995152~~chr21:33126060-33128582,
chr21:32993595-32995110~~chr21:33126657-33128503,
chr21:32993635-32995165~~chr21:33126534-33128328,
chr21:32993646-32995155~~chr21:33126534-33128326,
chr21:32993664-32995444~~chr21:33126650-33128283,
chr21:32993764-32995256~~chr21:33126722-33128225,
chr21:33000000-33025000~~chr21:33125000-33150000,
chr21:33024317-33026272~~chr21:33126060-33128582,
chr21:33024339-33026293~~chr21:33126076-33128364,
chr21:33025000-33050000~~chr21:33125000-33150000,
chr21:33131615-33132962~~chr21:33196193-33197945,
chr21:33131684-33132957~~chr21:33196262-33197918,