Deatailed information for cohesin site CDBP00417212

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  • Basic information
  • CohesinDB ID: CDBP00417212
  • Locus: chr21-33137817-33138207
  • Data sourse: GSE67783, GSE86191
  • Cell type: HCT-116, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.978
  • Subunit: SA1,Rad21
  • CTCF binding site: CTCF CTCF motif: False
  • Genomic location: Intergenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 93% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "14_ReprPCWk": 61%, "15_Quies": 22%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: FOSL1, PGR, ZNF391, ZSCAN5C, NME2, XBP1, PATZ1, FOXA1, PBX2, ZNF596, TFAP4, BMI1, INSM2, ZFP64, CHD7, ZBTB44, IKZF3, ZNF322, ZNF429, ZNF189, ZSCAN4, ZNF467, ZNF629, TRIM28, ZNF121, KLF10, ZBTB49, OCA2, ZNF561, CTCF, TCF12, ZNF577, BAF155, EP300, KLF1, E2F6, PRDM4, ZNF423, ZNF528, TEAD4, PDX1, GLIS1, POU2F2, NANOG, POU5F1, MYCN, TOP2A, RUNX1T1, ZNF778, CTBP1, ZNF317, ZBTB17, ZNF433, ZBTB48, ZSCAN5A, ZBTB1, ERG2, SP4, ERG, PAX6, ASCL1, ZBTB8A, ZNF341, MYC, EZH1, SMARCA4, EOMES, ZNF2, RAD21, TSHZ1, GRHL3, GABPA, XRCC5, NKX3-1, ZNF639, NR3C1, CREB1, FOXK1, EZH2, KLF8, FEZF1, KLF17, HDAC2, GATA2, ZNF554, SMC1A, EZH2phosphoT487, NKX2-2, CRY1, LDB1, ZFX, SMAD3, ZNF770, ERG3, CBX8, ZNF513, SMARCC1, ZNF18, PRDM10, CREBBP, ZNF35, ZNF384, OSR2, ZNF184, ARNT, PRDM9, ZEB2, HMBOX1, ZNF518A, MAFB, ZNF10, CDK8, MED1, ZEB1, ZXDB, ZNF558, PIAS1, KLF9, C11orf30, L3MBTL2, SETDB1, KLF16, USF1, BCL11A, ARID1A, OVOL3, GLI2, ASH2L, CTBP2, PHIP, FOXP1, PRDM6, ZNF34, STAG1, ZNF239, ZNF394, PPARG, ZNF207, TBL1X, FOXA2, SS18, ZNF600, ZSCAN16, WT1, ZNF30, ZNF574, HOXB13, ZNF580, KDM1A, YY1, RELA, NEUROD1, JUNB, BRG1, ASXL1, SP140, ZIC2, HIF1A, ZFP36, OTX2, TAL1, MAX, ZNF143, GATA1, CBX2, TLE3, ZFP69B, SP7, GFI1B, NR2F1, TP53, PKNOX1, ZNF213, ZBTB6, T, ZNF843, AR, ZNF324, EGLN2, ZBTB42, ZNF366, BRD3, RNF2, NCOR1, BRD4, SCRT1, MAZ, ZSCAN23, ZNF24, AHR
  • Target gene symbol (double-evidenced CRMs): SYNJ1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 4
  • Related genes and loops
  • Related gene: ENSG00000159082,
  • Related loop: chr21:32625000-32650000~~chr21:33125000-33150000, chr21:32650000-32675000~~chr21:33125000-33150000, chr21:32825000-32850000~~chr21:33125000-33150000, chr21:32850000-32875000~~chr21:33125000-33150000, chr21:32925000-32950000~~chr21:33125000-33150000, chr21:32950000-32975000~~chr21:33125000-33150000, chr21:32975000-33000000~~chr21:33125000-33150000, chr21:33000000-33025000~~chr21:33125000-33150000, chr21:33025000-33050000~~chr21:33125000-33150000, chr21:33131615-33132962~~chr21:33196193-33197945, chr21:33131684-33132957~~chr21:33196262-33197918,
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