- Basic information
- CohesinDB ID: CDBP00417214
- Locus: chr21-33144459-33144719
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 66%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, CHD8, MEF2B, FOXA2, NKX2-2, ZSCAN5C, EZH2phosphoT487, KDM4C, ZFX, SOX2, XBP1, POU5F1, DUX4, ZSCAN5A, WT1, FOXA1, ERG3, DDX5, SUZ12, HOXB13, MYCN, ERG, ZNF19, RELA, KDM1A, YY1, SMARCA4, GRHL3, NKX2-1, PRDM9, TAL1, STAT3, APC, NKX3-1, GATA1, ZNF143, SP2, ZNF736, CDX2, CBX2, JMJD1C, ZNF121, EBF1, EZH2, STAG1, ESR1, TP53, KLF9, JUN, SND1, SPI1, BCL11A, AR, ZNF257, ZBTB42, BRD4, MAZ, NCOR2, PDX1, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159082,
- Related loop:
chr21:32625000-32650000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:33125000-33150000,
chr21:32825000-32850000~~chr21:33125000-33150000,
chr21:32850000-32875000~~chr21:33125000-33150000,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32950000-32975000~~chr21:33125000-33150000,
chr21:32975000-33000000~~chr21:33125000-33150000,
chr21:33000000-33025000~~chr21:33125000-33150000,
chr21:33025000-33050000~~chr21:33125000-33150000,