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Basic information

CohesinDB ID: CDBP00417215

Locus: chr21-33149149-33149999

Data sourse: GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 50%, "13_ReprPC": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, PPARG, TBL1X, EZH2phosphoT487, POU5F1, SOX2, ZFX, ZNF621, XBP1, WT1, ZBTB48, FOXA1, TET2, SUZ12, PRDM10, KDM1A, ERG, RELA, ZNF384, ASCL1, NEUROD1, MYC, SMARCA4, ZBTB5, SP140, GRHL3, NKX2-1, OTX2, GABPA, MAX, ZNF143, MED1, CBX2, CEBPB, ZEB1, SCRT2, EZH2, TP53, KLF9, ZNF334, ZSCAN22, CTCF, BAF155, EP300, AR, IRF1, HDAC2, ZNF324, ZNF182, POU2F3, HSF1, BRD4, SCRT1, FOXP1, CLOCK, MAZ, AATF, ZNF554, STAG1, EED

Target gene symbol (double-evidenced CRMs): SYNJ1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 12

Related genes and loops

Related gene: ENSG00000159082,

eachgene

Deatailed information for cohesin site CDBP00417215