- Basic information
- CohesinDB ID: CDBP00417220
- Locus: chr21-33157388-33157662
-
Data sourse: ENCSR000BLD, GSE105028, ENCSR153HNT, GSE138405
-
Cell type: K-562, H1-hESC, Hela-Kyoto, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 62%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NANOG, FOXA2, ZNF263, CDK7, SIN3A, MIER2, GTF2B, ZBTB17, PCBP2, STAT1, FOXA1, ERG3, ERG2, SP4, CDK9, ZFHX2, TBP, ZNF596, YY1, HOXB13, MIER1, MYC, PRDM1, SP3, HIF1A, GABPA, MAX, ZNF398, FOS, GATA1, MED1, ARNTL, ZNF467, TRIM28, SCRT2, EZH2, MLLT1, KDM5B, KLF8, SAP30, ZBTB6, ESR1, ZSCAN22, EGR2, PHOX2B, SP1, KLF1, BAF155, BCL11A, HDAC2, REST, EGLN2, ZNF366, SIX2, HSF1, BRD4, AFF1, BCOR, FOXP1, MAZ, TEAD4, ZNF24, EHMT2
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops