- Basic information
- CohesinDB ID: CDBP00417221
- Locus: chr21-33161530-33162077
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Data sourse: GSE120943, GSE67783, GSE86191, GSE98367
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Cell type: Monocytes, HCT-116, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 49%,
"15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, ZSCAN5D, EZH2phosphoT487, CBX3, SOX2, ZFX, NME2, ZBTB17, WT1, SMAD3, FOXA1, ERG3, SUZ12, HOXB13, ZNF596, PRDM10, ERG, KDM1A, RELA, ATF3, CHD7, RAD21, ZIC2, HIF1A, MAX, NKX3-1, PRDM14, RCOR1, ZNF320, HDAC3, MED1, TLE3, NR2F2, ZMYM3, EZH2, PKNOX1, ZNF334, CTCF, EP300, BAF155, AR, ZNF257, ARID1A, E2F6, RBM25, ASH2L, BRD4, BCOR, MAZ, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops