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Basic information

CohesinDB ID: CDBP00417229

Locus: chr21-33181665-33182455

Data sourse: GSE116344, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, RH4, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 54%, "15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, ZNF263, MYCN, ZFX, ZBTB17, WT1, ZBTB48, ZSCAN5A, ERG3, TBP, YY1, ZNF384, TARDBP, MYC, SP140, ARNT, TCF7L2, EZH2, TP53, OCA2, CTCF, AR, REST, HSF1, NOTCH3, BRD4, CLOCK, MAZ, STAG1

Target gene symbol (double-evidenced CRMs): CRYZL1,IFNAR1,IFNGR2,TMEM50B,SYNJ1,AP000311.1,EVA1C

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000166979, ENSG00000159082, ENSG00000142166, ENSG00000159128, ENSG00000142188, ENSG00000249209, ENSG00000205758,

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Deatailed information for cohesin site CDBP00417229