- Basic information
- CohesinDB ID: CDBP00417237
- Locus: chr21-33193411-33193657
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 62%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): EVA1C,SYNJ1,IFNGR2,CRYZL1,AP000311.1,TMEM50B,IFNAR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000159082,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
ENSG00000249209,
ENSG00000205758,
- Related loop:
chr21:32400000-32425000~~chr21:33175000-33200000,
chr21:32650000-32675000~~chr21:33175000-33200000,
chr21:32652386-32654426~~chr21:33196166-33197911,
chr21:32652499-32654463~~chr21:33196237-33197895,
chr21:32652542-32654360~~chr21:33196187-33197905,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32825000-32850000~~chr21:33175000-33200000,
chr21:32832056-32833659~~chr21:33196178-33197975,
chr21:32832067-32833668~~chr21:33196209-33197929,
chr21:32832075-32833690~~chr21:33196164-33197927,
chr21:32832231-32833433~~chr21:33196199-33197967,
chr21:32850000-32875000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32921135-32922576~~chr21:33196131-33197893,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32939598-32941625~~chr21:33196237-33197895,
chr21:32939617-32941600~~chr21:33196262-33197907,
chr21:32939619-32941696~~chr21:33196164-33197927,
chr21:32939673-32941295~~chr21:33196226-33197905,
chr21:32939770-32941261~~chr21:33196285-33197839,
chr21:32939856-32941390~~chr21:33195966-33197950,
chr21:32975000-33000000~~chr21:33175000-33200000,
chr21:32993207-32995324~~chr21:33196243-33197889,
chr21:32993426-32995167~~chr21:33196158-33197940,
chr21:32993440-32995435~~chr21:33196275-33197980,
chr21:32993524-32995166~~chr21:33196196-33197944,
chr21:32993555-32995462~~chr21:33196237-33197895,
chr21:32993664-32995444~~chr21:33195966-33197950,
chr21:32993690-32995144~~chr21:33196531-33197869,
chr21:33131615-33132962~~chr21:33196193-33197945,
chr21:33131684-33132957~~chr21:33196262-33197918,
chr21:33175000-33200000~~chr21:33350000-33375000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33196199-33197967~~chr21:33444382-33446347,
chr21:33198398-33200659~~chr21:33373911-33375521,
chr21:33198398-33200659~~chr21:33444682-33446480,
chr21:33198546-33200679~~chr21:33444546-33446097,