- Basic information
- CohesinDB ID: CDBP00417238
- Locus: chr21-33194152-33195061
-
Data sourse: GSE206145, GSE131606, GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC, RPE, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
93% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 56%,
"15_Quies": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RELA, PLAG1, CBX2, PAX8, ZFX, WT1, MAX, USF1, ZNF736
- Target gene symbol (double-evidenced CRMs): EVA1C,TMEM50B,IFNAR1,IFNGR2,CRYZL1,SYNJ1,AP000311.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000166979,
ENSG00000159082,
ENSG00000142166,
ENSG00000159128,
ENSG00000142188,
ENSG00000249209,
ENSG00000205758,
- Related loop:
chr21:29300000-29325000~~chr21:33200000-33225000,
chr21:32400000-32425000~~chr21:33175000-33200000,
chr21:32650000-32675000~~chr21:33175000-33200000,
chr21:32652386-32654426~~chr21:33196166-33197911,
chr21:32652499-32654463~~chr21:33196237-33197895,
chr21:32652542-32654360~~chr21:33196187-33197905,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32825000-32850000~~chr21:33175000-33200000,
chr21:32832056-32833659~~chr21:33196178-33197975,
chr21:32832067-32833668~~chr21:33196209-33197929,
chr21:32832075-32833690~~chr21:33196164-33197927,
chr21:32832231-32833433~~chr21:33196199-33197967,
chr21:32850000-32875000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32921135-32922576~~chr21:33196131-33197893,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32939598-32941625~~chr21:33196237-33197895,
chr21:32939617-32941600~~chr21:33196262-33197907,
chr21:32939619-32941696~~chr21:33196164-33197927,
chr21:32939673-32941295~~chr21:33196226-33197905,
chr21:32939770-32941261~~chr21:33196285-33197839,
chr21:32939856-32941390~~chr21:33195966-33197950,
chr21:32975000-33000000~~chr21:33175000-33200000,
chr21:32993207-32995324~~chr21:33196243-33197889,
chr21:32993426-32995167~~chr21:33196158-33197940,
chr21:32993440-32995435~~chr21:33196275-33197980,
chr21:32993524-32995166~~chr21:33196196-33197944,
chr21:32993555-32995462~~chr21:33196237-33197895,
chr21:32993664-32995444~~chr21:33195966-33197950,
chr21:32993690-32995144~~chr21:33196531-33197869,
chr21:33131615-33132962~~chr21:33196193-33197945,
chr21:33131684-33132957~~chr21:33196262-33197918,
chr21:33175000-33200000~~chr21:33350000-33375000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33175000-33200000~~chr21:33600000-33625000,
chr21:33196199-33197967~~chr21:33444382-33446347,
chr21:33198398-33200659~~chr21:33373911-33375521,
chr21:33198398-33200659~~chr21:33444682-33446480,
chr21:33198546-33200679~~chr21:33444546-33446097,
chr21:33199025-33201086~~chr21:33373747-33375905,
chr21:33199025-33201086~~chr21:33444396-33446544,
chr21:33199028-33200850~~chr21:33444393-33446601,
chr21:33199037-33200983~~chr21:33360047-33362483,
chr21:33199037-33200983~~chr21:33373772-33376036,
chr21:33199037-33200983~~chr21:33444394-33446526,
chr21:33199045-33200951~~chr21:33360197-33362875,
chr21:33199045-33200951~~chr21:33373804-33376065,
chr21:33199045-33200951~~chr21:33444636-33446481,
chr21:33199050-33200800~~chr21:33360051-33362614,
chr21:33199050-33200800~~chr21:33373781-33376153,
chr21:33199050-33200800~~chr21:33443901-33446577,
chr21:33199050-33200857~~chr21:33373787-33375924,
chr21:33199050-33200857~~chr21:33444407-33446602,
chr21:33199054-33200784~~chr21:33360453-33362457,
chr21:33199054-33200784~~chr21:33444405-33446286,
chr21:33199054-33200920~~chr21:33444381-33446578,
chr21:33199055-33200924~~chr21:33444392-33446476,
chr21:33199055-33201024~~chr21:33360153-33362582,
chr21:33199055-33201024~~chr21:33373597-33375828,
chr21:33199055-33201024~~chr21:33444393-33446535,
chr21:33199058-33200673~~chr21:33373965-33375569,
chr21:33199058-33200673~~chr21:33444549-33446058,
chr21:33199058-33200767~~chr21:33373905-33375710,
chr21:33199058-33201037~~chr21:33444352-33446507,
chr21:33199059-33200758~~chr21:33373019-33376113,
chr21:33199059-33200758~~chr21:33444411-33446307,
chr21:33199061-33200809~~chr21:33443867-33446335,
chr21:33199061-33200994~~chr21:33360009-33362674,
chr21:33199061-33200994~~chr21:33373693-33376103,
chr21:33199061-33200994~~chr21:33444395-33446546,
chr21:33199063-33200997~~chr21:33360045-33362734,
chr21:33199063-33200997~~chr21:33373686-33376129,
chr21:33199063-33200997~~chr21:33444390-33446463,
chr21:33199063-33201023~~chr21:33373680-33375788,
chr21:33199064-33200992~~chr21:33373698-33376058,
chr21:33199064-33200992~~chr21:33444374-33446541,
chr21:33199071-33200963~~chr21:33360153-33362100,
chr21:33199071-33200963~~chr21:33373671-33376017,
chr21:33199071-33200963~~chr21:33434105-33435828,
chr21:33199071-33200963~~chr21:33444382-33446347,
chr21:33199071-33200963~~chr21:33478656-33481090,
chr21:33199073-33200905~~chr21:33444418-33446468,
chr21:33199073-33200975~~chr21:33444374-33446510,
chr21:33199073-33200975~~chr21:33605089-33606865,
chr21:33199075-33200850~~chr21:33360213-33362978,
chr21:33199075-33200850~~chr21:33373649-33376041,
chr21:33199075-33200850~~chr21:33444400-33446333,
chr21:33199075-33200850~~chr21:33605075-33606736,
chr21:33199075-33200916~~chr21:33360017-33362749,
chr21:33199075-33200916~~chr21:33444399-33446509,
chr21:33199076-33200916~~chr21:33360130-33362524,
chr21:33199076-33200916~~chr21:33444431-33446547,
chr21:33199079-33200988~~chr21:33360176-33362505,
chr21:33199079-33200988~~chr21:33373770-33375893,
chr21:33199079-33200988~~chr21:33443815-33446553,
chr21:33199079-33200988~~chr21:33605044-33606865,
chr21:33199079-33200999~~chr21:33443868-33446510,
chr21:33199081-33200983~~chr21:33444401-33446475,
chr21:33199086-33200764~~chr21:33360477-33362524,
chr21:33199086-33200764~~chr21:33444420-33446284,
chr21:33199086-33200764~~chr21:33605125-33606849,
chr21:33199087-33200894~~chr21:33373730-33375882,
chr21:33199087-33200894~~chr21:33444395-33446595,
chr21:33199087-33200894~~chr21:33605021-33606880,
chr21:33199094-33200842~~chr21:33373665-33375712,
chr21:33199095-33200896~~chr21:33374154-33375564,
chr21:33199100-33200791~~chr21:33360203-33362100,
chr21:33199100-33200791~~chr21:33373764-33375895,
chr21:33199100-33200791~~chr21:33444407-33446481,
chr21:33199101-33200973~~chr21:33444376-33446489,
chr21:33199111-33200695~~chr21:33444601-33446061,
chr21:33199112-33200780~~chr21:33901120-33902781,
chr21:33199120-33200900~~chr21:33444450-33446275,
chr21:33199124-33200675~~chr21:33360104-33362934,
chr21:33199124-33200675~~chr21:33373671-33376085,
chr21:33199124-33200675~~chr21:33444541-33446079,
chr21:33199124-33200675~~chr21:33605312-33606732,
chr21:33199126-33200779~~chr21:33444632-33446271,
chr21:33199158-33200692~~chr21:33444614-33446077,
chr21:33199158-33200742~~chr21:33360558-33362130,
chr21:33199168-33200811~~chr21:33373895-33375674,
chr21:33199174-33200665~~chr21:33373871-33376085,
chr21:33199174-33200665~~chr21:33444604-33446075,
chr21:33199181-33200686~~chr21:33444661-33446059,
chr21:33200000-33225000~~chr21:33300000-33325000,
chr21:33200000-33225000~~chr21:33325000-33350000,
chr21:33200000-33225000~~chr21:33350000-33375000,
chr21:33200000-33225000~~chr21:33375000-33400000,
chr21:33200000-33225000~~chr21:33400000-33425000,
chr21:33200000-33225000~~chr21:33425000-33450000,
chr21:33200000-33225000~~chr21:33450000-33475000,
chr21:33200000-33225000~~chr21:33550000-33575000,
chr21:33200000-33225000~~chr21:33575000-33600000,
chr21:33200000-33225000~~chr21:33600000-33625000,
chr21:33200000-33225000~~chr21:33800000-33825000,
chr21:33200000-33225000~~chr21:33875000-33900000,
chr21:33200000-33225000~~chr21:33900000-33925000,
chr21:33200000-33225000~~chr21:34350000-34375000,
chr21:33200000-33225000~~chr21:34600000-34625000,
chr21:33200000-33225000~~chr21:42225000-42250000,