Browse_each

Basic information

CohesinDB ID: CDBP00417246

Locus: chr21-33224686-33226597

Data sourse: GSE126755, ENCSR338DUC, ENCSR230ZWH, GSE72082, GSE86191, ENCSR000BLS, GSE206145, ENCSR054FKH, GSE62063, ENCSR153HNT, GSE116344, ENCSR000EDW, ENCSR917QNE

Cell type: RPE, HCT-116, RH4, Hep-G2, K-562, Liver, Neutrophil, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.911

Subunit: NIPBL,SMC3,Rad21,SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 93% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 73%, "14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, ZNF211, ZFX, BAHD1, CTCF, TRIM22, GATA1, BCL11A

Target gene symbol (double-evidenced CRMs): CRYZL1,SON,SMIM11A,AP000311.1,RCAN1,TMEM50B,DONSON,AP000295.1,ITSN1,IFNGR2,IFNAR2,IFNAR1,ATP5PO,IL10RB

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 10

Related genes and loops

Related gene: ENSG00000249624, ENSG00000159110, ENSG00000243646, ENSG00000142166, ENSG00000159128, ENSG00000142188, ENSG00000159140, ENSG00000159147, ENSG00000249209, ENSG00000205758, ENSG00000205726, ENSG00000241837, ENSG00000205670, ENSG00000159200,

eachgene

Deatailed information for cohesin site CDBP00417246